iMolTalk - Structural Bioinformatics Toolkit

	Display detailed information about a PDB structure PDB model ModBase MTDBpub
	Compute Ramachandran plot (Φ/Ψ angles)
	Compute Distance Matrix of Cα atoms
	Find Contacts for a residue Or, Distances between a pair of residues
	Find Interface between two chains of a structure
	Compute Secondary structure assignment
	Structural Alignment computation, derivation and verification Structurally compare all models in a structure
	Analyse domain motion in homologous structures
	Run and inspect Whatcheck report on structure

	* List of models and reconstructed AAA+ rings * Superimpose AAA+ proteins based on ATPase domain * Submit monomers to Multimer Ring Modeling * Check database of Docked Multimer Ring Models
	Align sequence (e.g. SEQRES) to structural chain. Multiple sequence alignment of all chains in an oligomeric structure. Multiple sequence alignment of homologous chains to a structure.
	Optimise model towards MODELLER restraints. Energy minimization using Dynamo v2 MM force field (OPLS). Energy minimization using BALL MM force field (Amber).
	SCRWL side-chain remodeling Point mutation and side-chain remodeling with SCRWL
	Anolea statistical potential indicates badly placed sidechains
	Analyse van der Waals overlaps
	Edit models
	Select residues in a structure for manipulation or mapping/visualization

	Display detailed information about a PDB structure PDB model ModBase MTDBpub
	Query the database of macromolecular structures
	Browse homologous structures (pre-computed Blastp all against all)
	Search homologous structures using sequence comparison (Blastp)
	Scripting editor that let's you write any MolTalk program.

	Display detailed information about a PDB structure PDB model ModBase MTDBpub
	Annotate a sequence with structural features.
	Align a sequence against all annotated HMMs in the server.

Version: 3.2

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Copyright © 2004-2007 by Alexander V. Diemand

Funding kindly acknowledged from the Max-Planck Society, Germany.